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Cluster News
02-10-2006: Added 64 new Dual Dual Xeon EM64T nodes...(more)
11-14-2005: Added two new software resources to the cluster....(more)
11-04-2005: Upgraded PBSPro to newest version of software.
11-03-2005: Upgraded MPICH to newest release. Old version of...(more)
09-06-2005: Starting today all queue's require the use of...(more)
View all News
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Page still under construction
Computing Resources
Bioinformatics Cluster at the Information and Telecommunication Technology Center (fusion.bioinfo.ittc.ku.edu)
Bioinformatics Cluster at the University of Kansas Medical Center (bioc-frontend.kumc.ku.edu)
Shared memory machine for serial jobs (benchmark.bioinfo.ittc.ku.edu)
System designed for login and queue submitions. (explorer.bioinfo.ittc.ku.edu)
System designed for login and queue submitions. (firefox.bioinfo.ittc.ku.edu)
Shared memory machine for serial jobs (freestyle.bioinfo.ittc.ku.edu)
Bioinformatics Cluster at the Information and Telecommunication Technology Center
The Bioinformatics Cluster at ITTC is a 64-node dual-processor Beowulf cluster connected with 25 terrabytes of storage, constructed in 2005. The system was implemented to provide a high-performance computing environment, coupled with high-availability storage and backup solution.
| Bioinformatics Cluster at the Information and Telecommunication Technology Center |
| Number of Nodes | 128 |
| Processors Total | 384 |
| Theoretical Peak Performance | 1344 GFlops |
| Total Peak Performance | 980 GFlops |
| Total Memory | 640 GB |
| Total Disk | 18688 GB |
| Operating System | Linux |
| Interconnect Technology | Gigabit Ethernet (x2) |
| Communication Software | MPICH2 |
| Main Application Area | Bioinformatics |
| Year Installed | 2005 |
| Each Node |
| Type of Processor | Intel Xeon EM64T |
| Processors per Node | 2x64 - 4x64 |
| Frequency | Dual@3200 Mhz Quad@2800 Mhz |
| Node Peak Performance | Dual@7.0 GFlops Quad@12.0 GFlops |
| Memory per Node | Dual@4096 MB - Quad@6144 MB |
| Disk per Node | 146 GB |
| Filesystem Node |
| Type of Processor | Intel Xeon EM64T |
| Processors | 2 |
| Frequency | 3200 Mhz |
| Total Disk | 146 GB |
| Total Disk | 4096 MB |
| Filesystem (SAN) |
| Dual RAID Controllers |
| 4GB Cache per Controller |
| 17T (10000 GB) SATA RAID 5 (6+1) |
| 15T (15000 GB) Fibre Channel RAID 5 (7+1) |
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Bioinformatics Cluster at the University of Kansas Medical Center
The KU Medical Center Cluster is a 16-node dual-processor Beowulf cluster connected with 3 terrabytes of storage, constructed in 2005. The system was implemented to provide a high-performance computing environment, coupled with high-availability storage and backup solution. This cluster is installed at the University of Kansas Medical Center in Kansas City, Missouri.
- Ganglia Cluster Status
- Cluster Queue
- Software
| Bioinformatics Cluster at the University of Kansas Medical Center |
| Number of Nodes | 17 |
| Processors Total | 34 |
| Theoretical Peak Performance | 119 GFlops |
| Total Peak Performance | 100 GFlops |
| Total Memory | 68 GB |
| Total Disk | 2482 GB |
| Operating System | Linux |
| Interconnect Technology | Gigabit Ethernet (x2) |
| Communication Software | MPICH2 |
| Main Application Area | Bioinformatics |
| Year Installed | 2005 |
| Each Node |
| Type of Processor | Intel Xeon EM64T |
| Processors per Node | 2 |
| Frequency | 3200 Mhz |
| Node Peak Performance | 7.0 GFlops |
| Memory per Node | 4096 MB |
| Disk per Node | 146 GB |
| Filesystem Node |
| Type of Processor | Intel Xeon EM64T |
| Processors | 2 |
| Frequency | 3200 Mhz |
| Total Disk | 146 GB |
| Total Disk | 4096 MB |
| Filesystem (SAN) |
| Single RAID Controller |
| 2GB Cache per Controller |
| 3T (3000 GB) SATA RAID 5 (6+1) |
| 200 GB Fibre Channel RAID 5 (4+1) |
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benchmark
| benchmark |
| Processor 1 | 3.2 GhZ Xeon, EM64T |
| Processor 2 | 3.2 GhZ Xeon, EM64T |
| Memory | 4 GB |
| Installed | 2005-03-31 |
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explorer
Explorer is dual login server. The system is exactly like fusion, and its role. Firefox has a backup with the name firefox.
| explorer |
| Processor 1 | Intel Xeon 3.2 Ghz EM64T |
| Processor 2 | Intel Xeon 3.2 Ghz EM64T |
| Memory | 4GB |
| Installed | 2006-06-23 |
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firefox
Firefox is dual login server. The system is exactly like fusion, and its role. Firefox has a backup with the name explorer.
| firefox |
| Processor 1 | Intel Xeon 3.2 Ghz EM64T |
| Processor 2 | Intel Xeon 3.2 Ghz EM64T |
| Memory | 4 GB |
| Installed | 2005-05-23 |
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freestyle
Freestyle is quad stand-alone system for Matlab and serial job use.
| freestyle |
| Processor 1 | Intel Xeon 3.2 Ghz EM64T x2 |
| Processor 2 | Intel Xeon 3.2 Ghz EM64T x2 |
| Memory | 16GB |
| Disk 1 | 10k-73GB Ultra320 |
| Disk 2 | 10k-73GB Ultra320 |
| Disk 3 | 10k-73GB Ultra320 |
| Installed | 2005-05-23 |
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